It would be very close and tbh, i would say it would just depend on the game. I wouldn't bother going through the hassle of changing the cards over if you already have the 7970's. If you look at GTX 690 reviews, the 7970 crossfire and GTX 690 usually are very close, but AMD drivers have improved 7970 performance quite a bit since then. The new 12.6 beta drivers have given the 7970 a decent boost in performance over the original drivers, around 13% in most cases. It does seem to be getting better and better too, so if i was you i wouldn't rush out and get a GTX 690. But if you really do feel like you need the space then that is your only option.
Edit : just thinking then, by the time you've factored in the cost of getting the GTX 690 after selling your 7970's, wouldn't it be just as easy and as cheap to get a new motherboard with proper spacing????? That would solve the problem and you'd get a good chunk of the money back selling your current motherboard!!