Check the volt ratings on the actual fan, but the red wire will be +ve and the black -ve (or 0v for dc).
If it does the +12v most pc fans do, it'll be a case of finding a way to get those red/black wires on the header the same way the normal 3pin does. Most weird looking ones will fit on.
U find weird 2pin connectors on those meant for heatsinks.
Be easier to get 2x 3pin connectors and take the 2 pins out of their connector and put them in the 3pin. Leaving the 3rd empty.